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Image and Video Processing (eess.IV)

Tue, 23 May 2023

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1.KidneyRegNet: A Deep Learning Method for 3DCT-2DUS Kidney Registration during Breathing

Authors:Chi Yanling, Xu Yuyu, Liu Huiying, Wu Xiaoxiang, Liu Zhiqiang, Mao Jiawei, Xu Guibin, Huang Weimin

Abstract: This work proposed a novel deep registration pipeline for 3D CT and 2D U/S kidney scans of free breathing, which consists of a feature network, and a 3D-2D CNN-based registration network. The feature network has handcraft texture feature layers to reduce the semantic gap. The registration network is encoder-decoder structure with loss of feature-image-motion (FIM), which enables hierarchical regression at decoder layers and avoids multiple network concatenation. It was first pretrained with retrospective datasets cum training data generation strategy, then adapted to specific patient data under unsupervised one-cycle transfer learning in onsite application. The experiment was on 132 U/S sequences, 39 multiple phase CT and 210 public single phase CT images, and 25 pairs of CT and U/S sequences. It resulted in mean contour distance (MCD) of 0.94 mm between kidneys on CT and U/S images and MCD of 1.15 mm on CT and reference CT images. For datasets with small transformations, it resulted in MCD of 0.82 and 1.02 mm respectively. For large transformations, it resulted in MCD of 1.10 and 1.28 mm respectively. This work addressed difficulties in 3DCT-2DUS kidney registration during free breathing via novel network structures and training strategy.

2.Multi-BVOC Super-Resolution Exploiting Compounds Inter-Connection

Authors:Antonio Giganti, Sara Mandelli, Paolo Bestagini, Marco Marcon, Stefano Tubaro

Abstract: Biogenic Volatile Organic Compounds (BVOCs) emitted from the terrestrial ecosystem into the Earth's atmosphere are an important component of atmospheric chemistry. Due to the scarcity of measurement, a reliable enhancement of BVOCs emission maps can aid in providing denser data for atmospheric chemical, climate, and air quality models. In this work, we propose a strategy to super-resolve coarse BVOC emission maps by simultaneously exploiting the contributions of different compounds. To this purpose, we first accurately investigate the spatial inter-connections between several BVOC species. Then, we exploit the found similarities to build a Multi-Image Super-Resolution (MISR) system, in which a number of emission maps associated with diverse compounds are aggregated to boost Super-Resolution (SR) performance. We compare different configurations regarding the species and the number of joined BVOCs. Our experimental results show that incorporating BVOCs' relationship into the process can substantially improve the accuracy of the super-resolved maps. Interestingly, the best results are achieved when we aggregate the emission maps of strongly uncorrelated compounds. This peculiarity seems to confirm what was already guessed for other data-domains, i.e., joined uncorrelated information are more helpful than correlated ones to boost MISR performance. Nonetheless, the proposed work represents the first attempt in SR of BVOC emissions through the fusion of multiple different compounds.

3.A Laplacian Pyramid Based Generative H&E Stain Augmentation Network

Authors:Fangda Li, Zhiqiang Hu, Wen Chen, Avinash Kak

Abstract: Hematoxylin and Eosin (H&E) staining is a widely used sample preparation procedure for enhancing the saturation of tissue sections and the contrast between nuclei and cytoplasm in histology images for medical diagnostics. However, various factors, such as the differences in the reagents used, result in high variability in the colors of the stains actually recorded. This variability poses a challenge in achieving generalization for machine-learning based computer-aided diagnostic tools. To desensitize the learned models to stain variations, we propose the Generative Stain Augmentation Network (G-SAN) -- a GAN-based framework that augments a collection of cell images with simulated yet realistic stain variations. At its core, G-SAN uses a novel and highly computationally efficient Laplacian Pyramid (LP) based generator architecture, that is capable of disentangling stain from cell morphology. Through the task of patch classification and nucleus segmentation, we show that using G-SAN-augmented training data provides on average 15.7% improvement in F1 score and 7.3% improvement in panoptic quality, respectively. Our code is available at https://github.com/lifangda01/GSAN-Demo.