Image and Video Processing (eess.IV)

Abstract: Motion represents one of the major challenges in magnetic resonance imaging (MRI). Since the MR signal is acquired in frequency space, any motion of the imaged object leads to complex artefacts in the reconstructed image in addition to other MR imaging artefacts. Deep learning has been frequently proposed for motion correction at several stages of the reconstruction process. The wide range of MR acquisition sequences, anatomies and pathologies of interest, and motion patterns (rigid vs. deformable and random vs. regular) makes a comprehensive solution unlikely. To facilitate the transfer of ideas between different applications, this review provides a detailed overview of proposed methods for learning-based motion correction in MRI together with their common challenges and potentials. This review identifies differences and synergies in underlying data usage, architectures and evaluation strategies. We critically discuss general trends and outline future directions, with the aim to enhance interaction between different application areas and research fields.

Abstract: Non-destructive assessments of plant phenotypic traits using high-quality three-dimensional (3D) and multispectral data can deepen breeders' understanding of plant growth and allow them to make informed managerial decisions. However, subjective viewpoint selection and complex illumination effects under natural light conditions decrease the data quality and increase the difficulty of resolving phenotypic parameters. We proposed methods for adaptive data acquisition and reflectance correction respectively, to generate high-quality 3D multispectral point clouds (3DMPCs) of plants. In the first stage, we proposed an efficient next-best-view (NBV) planning method based on a novel UGV platform with a multi-sensor-equipped robotic arm. In the second stage, we eliminated the illumination effects by using the neural reference field (NeREF) to predict the digital number (DN) of the reference. We tested them on 6 perilla and 6 tomato plants, and selected 2 visible leaves and 4 regions of interest (ROIs) for each plant to assess the biomass and the chlorophyll content. For NBV planning, the average execution time for single perilla and tomato plant at a joint speed of 1.55 rad/s was 58.70 s and 53.60 s respectively. The whole-plant data integrity was improved by an average of 27% compared to using fixed viewpoints alone, and the coefficients of determination (R2) for leaf biomass estimation reached 0.99 and 0.92. For reflectance correction, the average root mean squared error of the reflectance spectra with hemisphere reference-based correction at different ROIs was 0.08 and 0.07 for perilla and tomato. The R2 of chlorophyll content estimation was 0.91 and 0.93 respectively when principal component analysis and Gaussian process regression were applied. Our approach is promising for generating high-quality 3DMPCs of plants under natural light conditions and facilitates accurate plant phenotyping.

Abstract: We introduce a new technique for generating retinal fundus images that have anatomically accurate vascular structures, using diffusion models. We generate artery/vein masks to create the vascular structure, which we then condition to produce retinal fundus images. The proposed method can generate high-quality images with more realistic vascular structures and can create a diverse range of images based on the strengths of the diffusion model. We present quantitative evaluations that demonstrate the performance improvement using our method for data augmentation on vessel segmentation and artery/vein classification. We also present Turing test results by clinical experts, showing that our generated images are difficult to distinguish with real images. We believe that our method can be applied to construct stand-alone datasets that are irrelevant of patient privacy.

Abstract: In this paper, we propose an approach for cardiac magnetic resonance imaging (MRI), which aims to reconstruct a real-time video of a beating heart from continuous highly under-sampled measurements. This task is challenging since the object to be reconstructed (the heart) is continuously changing during signal acquisition. To address this challenge, we represent the beating heart with an implicit neural network and fit the network so that the representation of the heart is consistent with the measurements. The network in the form of a multi-layer perceptron with Fourier-feature inputs acts as an effective signal prior and enables adjusting the regularization strength in both the spatial and temporal dimensions of the signal. We examine the proposed approach for 2D free-breathing cardiac real-time MRI in different operating regimes, i.e., for different image resolutions, slice thicknesses, and acquisition lengths. Our method achieves reconstruction quality on par with or slightly better than state-of-the-art untrained convolutional neural networks and superior image quality compared to a recent method that fits an implicit representation directly to Fourier-domain measurements. However, this comes at a higher computational cost. Our approach does not require any additional patient data or biosensors including electrocardiography, making it potentially applicable in a wide range of clinical scenarios.

Abstract: Computed Tomography (CT) scans provide detailed and accurate information of internal structures in the body. They are constructed by sending x-rays through the body from different directions and combining this information into a three-dimensional volume. Such volumes can then be used to diagnose a wide range of conditions and allow for volumetric measurements of organs. In this work, we tackle the problem of reconstructing CT images from biplanar x-rays only. X-rays are widely available and even if the CT reconstructed from these radiographs is not a replacement of a complete CT in the diagnostic setting, it might serve to spare the patients from radiation where a CT is only acquired for rough measurements such as determining organ size. We propose a novel method based on the transformer architecture, by framing the underlying task as a language translation problem. Radiographs and CT images are first embedded into latent quantized codebook vectors using two different autoencoder networks. We then train a GPT model, to reconstruct the codebook vectors of the CT image, conditioned on the codebook vectors of the x-rays and show that this approach leads to realistic looking images. To encourage further research in this direction, we make our code publicly available on GitHub: XXX.