Image and Video Processing (eess.IV)

Abstract: Anomaly detection remains a challenging task in neuroimaging when little to no supervision is available and when lesions can be very small or with subtle contrast. Patch-based representation learning has shown powerful representation capacities when applied to industrial or medical imaging and outlier detection methods have been applied successfully to these images. In this work, we propose an unsupervised anomaly detection (UAD) method based on a latent space constructed by a siamese patch-based auto-encoder and perform the outlier detection with a One-Class SVM training paradigm tailored to the lesion detection task in multi-modality neuroimaging. We evaluate performances of this model on a public database, the White Matter Hyperintensities (WMH) challenge and show in par performance with the two best performing state-of-the-art methods reported so far.

Abstract: Multimodal magnetic resonance imaging (MRI) can reveal different patterns of human tissue and is crucial for clinical diagnosis. However, limited by cost, noise and manual labeling, obtaining diverse and reliable multimodal MR images remains a challenge. For the same lesion, different MRI manifestations have great differences in background information, coarse positioning and fine structure. In order to obtain better generation and segmentation performance, a coordination-spatial attention generation adversarial network (CASP-GAN) based on the cycle-consistent generative adversarial network (CycleGAN) is proposed. The performance of the generator is optimized by introducing the Coordinate Attention (CA) module and the Spatial Attention (SA) module. The two modules can make full use of the captured location information, accurately locating the interested region, and enhancing the generator model network structure. The ability to extract the structure information and the detailed information of the original medical image can help generate the desired image with higher quality. There exist some problems in the original CycleGAN that the training time is long, the parameter amount is too large, and it is difficult to converge. In response to this problem, we introduce the Coordinate Attention (CA) module to replace the Res Block to reduce the number of parameters, and cooperate with the spatial information extraction network above to strengthen the information extraction ability. On the basis of CASP-GAN, an attentional generative cross-modality segmentation (AGCMS) method is further proposed. This method inputs the modalities generated by CASP-GAN and the real modalities into the segmentation network for brain tumor segmentation. Experimental results show that CASP-GAN outperforms CycleGAN and some state-of-the-art methods in PSNR, SSMI and RMSE in most tasks.

Abstract: With nearly one million new cases diagnosed worldwide in 2020, head \& neck cancer is a deadly and common malignity. There are challenges to decision making and treatment of such cancer, due to lesions in multiple locations and outcome variability between patients. Therefore, automated segmentation and prognosis estimation approaches can help ensure each patient gets the most effective treatment. This paper presents a framework to perform these functions on arbitrary field of view (FoV) PET and CT registered scans, thus approaching tasks 1 and 2 of the HECKTOR 2022 challenge as team \texttt{VokCow}. The method consists of three stages: localization, segmentation and survival prediction. First, the scans with arbitrary FoV are cropped to the head and neck region and a u-shaped convolutional neural network (CNN) is trained to segment the region of interest. Then, using the obtained regions, another CNN is combined with a support vector machine classifier to obtain the semantic segmentation of the tumours, which results in an aggregated Dice score of 0.57 in task 1. Finally, survival prediction is approached with an ensemble of Weibull accelerated failure times model and deep learning methods. In addition to patient health record data, we explore whether processing graphs of image patches centred at the tumours via graph convolutions can improve the prognostic predictions. A concordance index of 0.64 was achieved in the test set, ranking 6th in the challenge leaderboard for this task.

Abstract: We study the collaborative image retrieval problem at the wireless edge, where multiple edge devices capture images of the same object, which are then used jointly to retrieve similar images at the edge server over a shared multiple access channel. We propose a semantic non-orthogonal multiple access (NOMA) communication paradigm, in which extracted features from each device are mapped directly to channel inputs, which are then added over-the-air. We propose a novel contrastive learning (CL)-based semantic communication (CL-SC) paradigm, aiming to exploit signal correlations to maximize the retrieval accuracy under a total bandwidth constraints. Specifically, we treat noisy correlated signals as different augmentations of a common identity, and propose a cross-view CL algorithm to optimize the correlated signals in a coarse-to-fine fashion to improve retrieval accuracy. Extensive numerical experiments verify that our method achieves the state-of-the-art performance and can significantly improve retrieval accuracy, with particularly significant gains in low signla-to-noise ratio (SNR) and limited bandwidth regimes.

Abstract: Optical coherence tomography angiography (OCTA) is a non-invasive imaging modality that extends the functionality of OCT by extracting moving red blood cell signals from surrounding static biological tissues. OCTA has emerged as a valuable tool for analyzing skin microvasculature, enabling more accurate diagnosis and treatment monitoring. Most existing OCTA extraction algorithms, such as speckle variance (SV)- and eigen-decomposition (ED)-OCTA, implement a larger number of repeated (NR) OCT scans at the same position to produce high-quality angiography images. However, a higher NR requires a longer data acquisition time, leading to more unpredictable motion artifacts. In this study, we propose a vasculature extraction pipeline that uses only one-repeated OCT scan to generate OCTA images. The pipeline is based on the proposed Vasculature Extraction Transformer (VET), which leverages convolutional projection to better learn the spatial relationships between image patches. In comparison to OCTA images obtained via the SV-OCTA (PSNR: 17.809) and ED-OCTA (PSNR: 18.049) using four-repeated OCT scans, OCTA images extracted by VET exhibit moderate quality (PSNR: 17.515) and higher image contrast while reducing the required data acquisition time from ~8 s to ~2 s. Based on visual observations, the proposed VET outperforms SV and ED algorithms when using neck and face OCTA data in areas that are challenging to scan. This study represents that the VET has the capacity to extract vascularture images from a fast one-repeated OCT scan, facilitating accurate diagnosis for patients.

Abstract: The power and flexibility of Optimal Transport (OT) have pervaded a wide spectrum of problems, including recent Machine Learning challenges such as unsupervised domain adaptation. Its essence of quantitatively relating two probability distributions by some optimal metric, has been creatively exploited and shown to hold promise for many real-world data challenges. In a related theme in the present work, we posit that domain adaptation robustness is rooted in the intrinsic (latent) representations of the respective data, which are inherently lying in a non-linear submanifold embedded in a higher dimensional Euclidean space. We account for the geometric properties by refining the $l^2$ Euclidean metric to better reflect the geodesic distance between two distinct representations. We integrate a metric correction term as well as a prior cluster structure in the source data of the OT-driven adaptation. We show that this is tantamount to an implicit Bayesian framework, which we demonstrate to be viable for a more robust and better-performing approach to domain adaptation. Substantiating experiments are also included for validation purposes.

Abstract: Knee OsteoArthritis (KOA) is a prevalent musculoskeletal disorder that causes decreased mobility in seniors. The lack of sufficient data in the medical field is always a challenge for training a learning model due to the high cost of labelling. At present, deep neural network training strongly depends on data augmentation to improve the model's generalization capability and avoid over-fitting. However, existing data augmentation operations, such as rotation, gamma correction, etc., are designed based on the data itself, which does not substantially increase the data diversity. In this paper, we proposed a novel approach based on the Vision Transformer (ViT) model with Selective Shuffled Position Embedding (SSPE) and a ROI-exchange strategy to obtain different input sequences as a method of data augmentation for early detection of KOA (KL-0 vs KL-2). More specifically, we fixed and shuffled the position embedding of ROI and non-ROI patches, respectively. Then, for the input image, we randomly selected other images from the training set to exchange their ROI patches and thus obtained different input sequences. Finally, a hybrid loss function was derived using different loss functions with optimized weights. Experimental results show that our proposed approach is a valid method of data augmentation as it can significantly improve the model's classification performance.

Abstract: The lack of reliable biomarkers makes predicting the conversion from intermediate to neovascular age-related macular degeneration (iAMD, nAMD) a challenging task. We develop a Deep Learning (DL) model to predict the future risk of conversion of an eye from iAMD to nAMD from its current OCT scan. Although eye clinics generate vast amounts of longitudinal OCT scans to monitor AMD progression, only a small subset can be manually labeled for supervised DL. To address this issue, we propose Morph-SSL, a novel Self-supervised Learning (SSL) method for longitudinal data. It uses pairs of unlabelled OCT scans from different visits and involves morphing the scan from the previous visit to the next. The Decoder predicts the transformation for morphing and ensures a smooth feature manifold that can generate intermediate scans between visits through linear interpolation. Next, the Morph-SSL trained features are input to a Classifier which is trained in a supervised manner to model the cumulative probability distribution of the time to conversion with a sigmoidal function. Morph-SSL was trained on unlabelled scans of 399 eyes (3570 visits). The Classifier was evaluated with a five-fold cross-validation on 2418 scans from 343 eyes with clinical labels of the conversion date. The Morph-SSL features achieved an AUC of 0.766 in predicting the conversion to nAMD within the next 6 months, outperforming the same network when trained end-to-end from scratch or pre-trained with popular SSL methods. Automated prediction of the future risk of nAMD onset can enable timely treatment and individualized AMD management.