Systems Biology

Survival-associated cellular communication networks in human solid cancers

Survival-associated cellular communication net...

Systems Biology
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librarian
22 views
Scalable proteomics with multiDIA resolves proteoforms in neurodegenerative disease

Scalable proteomics with multiDIA resolves pro...

Systems Biology
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Nikolai Slavov
22 views
Genetic Perturbation Prediction Models Fail Out-of-Distribution: A Rigorous Benchmark and Systematic Evaluation

Genetic Perturbation Prediction Models Fail Ou...

Systems Biology
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librarian
34 views
Dynamic flux balance analysis of cancer metabolism using expression-based human cell line models

Dynamic flux balance analysis of cancer metabo...

Systems Biology
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librarian
43 views
13C-Metabolic Flux Analysis of Substrate Co-Metabolism in the Methylotrophic Acetogen Eubacterium limosum.

13C-Metabolic Flux Analysis of Substrate Co-Me...

Systems Biology
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Benjamin Woolston
41 views
Common cis-eQTLs do not explain chromosome 21 expression deviations from the ploidy expectation in Down syndrome

Common cis-eQTLs do not explain chromosome 21 ...

Systems Biology
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Lucas Gillenwater
48 views
Network-scale disruption of RNA-protein interactions by a bioaccumulating small-molecule drug

Network-scale disruption of RNA-protein intera...

Systems Biology
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librarian
202 views
Kruppel-like factors KLF5 & KLF8 emerge as master transcriptional regulators of Alzheimers disease, as revealed on cell fate regulomes in human brain organoids

Kruppel-like factors KLF5 & KLF8 emerge as mas...

Systems Biology
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librarian
180 views
Single-cell foundation models predict durable CAR T response despite imperfect cell annotation

Single-cell foundation models predict durable ...

Systems Biology
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librarian
173 views
Morphomechanically-Informed Spatial Curvature Sequencing in Prostate Cancer

Morphomechanically-Informed Spatial Curvature ...

Systems Biology
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librarian
196 views
Regulatory Bias Constrains Epigenetic Aging Trajectories

Regulatory Bias Constrains Epigenetic Aging Tr...

Systems Biology
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Taisiia Morozova
188 views
Flux-species sampling enables holistic exploration of biocircuit behavior

Flux-species sampling enables holistic explora...

Systems Biology
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librarian
193 views
Rod pathway blockade improves visual function in a mouse model of photoreceptor degeneration

Rod pathway blockade improves visual function ...

Systems Biology
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Teresa Puthussery
184 views
Quantitative Description of C. elegans mRNA Landscapes From High Coverage Single Cell Transcriptomes

Quantitative Description of C. elegans mRNA La...

Systems Biology
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Denis Dupuy
185 views
ChatGEM: An Agentic Architecture Enabling Interactive Simulation of Genome-Scale Metabolic Models

ChatGEM: An Agentic Architecture Enabling Inte...

Systems Biology
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librarian
180 views
Dynamic knowledge representation of blood brain barrier activation, injury and restitution with a novel agent-based model

Dynamic knowledge representation of blood brai...

Systems Biology
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librarian
186 views
A hybrid machine learning and enzyme-constrained metabolic model for ab initio prediction of proteome reallocation

A hybrid machine learning and enzyme-constrain...

Systems Biology
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librarian
168 views
Diversity and evolution of the transcriptional regulatory networks of Pseudomonas strains revealed using machine learning

Diversity and evolution of the transcriptional...

Systems Biology
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librarian
181 views
Experimentally calibrated computational modeling of inflammation and vascular remodeling in breast cavity healing following breast-conserving surgery

Experimentally calibrated computational modeli...

Systems Biology
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librarian
192 views
Textural features for pathway-level representation of omics data in biological networks

Textural features for pathway-level representa...

Systems Biology
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librarian
183 views
Deep Visual Proteomics links vascular smooth muscle cell phenotypes to atherosclerotic plaque stability

Deep Visual Proteomics links vascular smooth m...

Systems Biology
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librarian
208 views
Coupled Cell-Intrinsic and Microenvironmental Heterogeneity Drives Divergent Trajectories in Castration-Resistant Prostate Cancer

Coupled Cell-Intrinsic and Microenvironmental ...

Systems Biology
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librarian
191 views
Predicting the protein interaction landscape of a mycobacterial pathogen

Predicting the protein interaction landscape o...

Systems Biology
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librarian
188 views
Large-scale, interpretable gene regulatory network inference through biologically informed matrix factorization

Large-scale, interpretable gene regulatory net...

Systems Biology
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librarian
188 views
Beta-adrenergic receptor activation during stress reduces the abundance of commensal Clostridia in the mouse gut

Beta-adrenergic receptor activation during str...

Systems Biology
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Brian Corbett
199 views
Axolotl regeneration reveals a dormant cis-regulatory grammar conserved across vertebrate genomes

Axolotl regeneration reveals a dormant cis-reg...

Systems Biology
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librarian
184 views
Gene Regulatory Networks that support Multi-Fate Cellular Decisions

Gene Regulatory Networks that support Multi-Fa...

Systems Biology
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librarian
175 views
Diversity in transcriptomics without cell types

Diversity in transcriptomics without cell types

Systems Biology
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Leyi Jiang
198 views
A Spatial Agent-Based Model of AGE-RAGE Feedback in Hepatic Fibrosis Reveals Stage-Dependent Irreversibility Thresholds

A Spatial Agent-Based Model of AGE-RAGE Feedba...

Systems Biology
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librarian
207 views
Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences

Large-scale analysis of optimisation methods f...

Systems Biology
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librarian
190 views
A Bioengineered Live Biotherapeutic Exploits Inflammation to Restore Gut Liver Brain Axis Function under Diet-Induced Stress

A Bioengineered Live Biotherapeutic Exploits I...

Systems Biology
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Sanjoy Ghosh
186 views
Regulatory memory and growth-coupled inheritance shape nutrient-dependent flagella number variation in Salmonella

Regulatory memory and growth-coupled inheritan...

Systems Biology
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librarian
194 views
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