TCRfinder: Improved TCR virtual screening for novel antigenic peptides with tailored language models

TCRfinder: Improved TCR virtual screening for ...

Bioinformatics
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librarian
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Leveraging Basecaller's Move Table to Generate a Lightweight k-mer Model

Leveraging Basecaller's Move Table to Generate...

Bioinformatics
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librarian
5 views
Ultra-fast variant effect prediction using biophysical transcription factor binding models

Ultra-fast variant effect prediction using bio...

Bioinformatics
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librarian
15 views
CryoViT: Efficient Segmentation of Cryogenic Electron Tomograms with Vision Foundation Models

CryoViT: Efficient Segmentation of Cryogenic E...

Bioinformatics
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librarian
12 views
MuCST: restoring and integrating heterogeneous morphology images and spatial transcriptomics data with contrastive learning

MuCST: restoring and integrating heterogeneous...

Bioinformatics
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librarian
7 views
Improved detection of microbiome-disease associations via population structure-aware generalized linear mixed effects models (microSLAM)

Improved detection of microbiome-disease assoc...

Bioinformatics
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librarian
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Hidden Structural States of Proteins Revealed byConformer Selection with AlphaFold-NMR

Hidden Structural States of Proteins Revealed ...

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Yuanpeng Huang
6 views
GeneCOCOA: Detecting context-specific functions of individual genes using co-expression data

GeneCOCOA: Detecting context-specific function...

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librarian
8 views
Graph neural networks best guide phenotypic virtual screening on cancer cell lines

Graph neural networks best guide phenotypic vi...

Bioinformatics
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librarian
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STAN, a computational framework for inferring spatially informed transcription factor activity across cellular contexts

STAN, a computational framework for inferring ...

Bioinformatics
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librarian
6 views
Gut microbial profiling of COVID-19 patients in Uganda

Gut microbial profiling of COVID-19 patients i...

Bioinformatics
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librarian
7 views
A Message Passing Framework for Precise Cell State Identification with scClassify2

A Message Passing Framework for Precise Cell S...

Bioinformatics
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librarian
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Read Length Dominates Phylogenetic Placement Accuracy of Ancient DNA Reads

Read Length Dominates Phylogenetic Placement A...

Bioinformatics
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librarian
20 views
Deciphering BRCAness Phenotype in Cancer: A Graph Convolutional Neural Network Approach with Layer-wise Relevance Propagation Analysis

Deciphering BRCAness Phenotype in Cancer: A Gr...

Bioinformatics
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librarian
14 views
MetaLATTE: Metal Binding Prediction via Multi-Task Learning on Protein Language Model Latents

MetaLATTE: Metal Binding Prediction via Multi-...

Bioinformatics
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librarian
17 views
RNA-ligand interaction scoring via data perturbation and augmentation modeling

RNA-ligand interaction scoring via data pertur...

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librarian
17 views
InterLabelGO+: Unraveling label correlations in protein function prediction

InterLabelGO+: Unraveling label correlations i...

Bioinformatics
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librarian
15 views
AntiCPs-CompML: A Comprehensive Fast Track ML method to predict Anti-Corona Peptides

AntiCPs-CompML: A Comprehensive Fast Track ML ...

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librarian
13 views
KATMAP: Inferring splicing factor activity and regulatory targets from knockdown data

KATMAP: Inferring splicing factor activity and...

Bioinformatics
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Michael McGurk
19 views
Network-Based Analysis Identifies Targetable Pathways in Comorbid Type II Diabetes and Neuropsychiatric Disorders

Network-Based Analysis Identifies Targetable P...

Bioinformatics
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librarian
12 views
In silico generation and augmentation of regulatory variants from massively parallel reporter assay using conditional variational autoencoder

In silico generation and augmentation of regul...

Bioinformatics
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Li Chen
9 views
PhyloFusion- Fast and easy fusion of rooted phylogenetic trees into rooted phylogenetic networks

PhyloFusion- Fast and easy fusion of rooted ph...

Bioinformatics
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Louxin Zhang
18 views
Challenges and Progress in RNA Velocity: Comparative Analysis Across Multiple Biological Contexts

Challenges and Progress in RNA Velocity: Compa...

Bioinformatics
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librarian
18 views
Adaptive Container Service: a New Paradigm for Robust and Optimized Bioinformatics Workflow Deployment in the Cloud.

Adaptive Container Service: a New Paradigm for...

Bioinformatics
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Zhong Wang
84 views
The Naive Bayes Classifier++ for Metagenomic Taxonomic Classification -- Query Evaluation

The Naive Bayes Classifier++ for Metagenomic T...

Bioinformatics
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librarian
17 views
Genomic sequences and annotations of two pseudomonas species isolated from marine and terrestrial habitats

Genomic sequences and annotations of two pseud...

Bioinformatics
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librarian
15 views
Faster and more accurate assessment of differential transcript expression with Gibbs sampling and edgeR 4.0

Faster and more accurate assessment of differe...

Bioinformatics
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librarian
13 views
Fast-scBatch: Batch Effect Correction Using Neural Network-Driven Distance Matrix Adjustment

Fast-scBatch: Batch Effect Correction Using Ne...

Bioinformatics
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Fu Chen
12 views
Nanopore Direct RNA Sequencing Reveals Virus-Induced Changes in the Transcriptional Landscape in Human Bronchial Epithelial Cells

Nanopore Direct RNA Sequencing Reveals Virus-I...

Bioinformatics
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Susan Schroeder
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CD-GPT: A Biological Foundation Model Bridging the Gap between Molecular Sequences Through Central Dogma

CD-GPT: A Biological Foundation Model Bridging...

Bioinformatics
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librarian
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A scalable computational framework for annotation-independent combinatorial target identification in scRNA-seq databases

A scalable computational framework for annotat...

Bioinformatics
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librarian
12 views
Unbiased and comprehensive identification of viral encoded circular RNAs in a large range of viral species and families

Unbiased and comprehensive identification of v...

Bioinformatics
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librarian
10 views