Mechanistic modeling and machine learning identifies optimum radiotherapy schedules to prevent treatment-induced metastasis

Mechanistic modeling and machine learning iden...

Bioinformatics
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librarian
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OmniPert: A Deep Learning Foundation Model for Predicting Responses to Genetic and Chemical Perturbations in Single Cancer Cells

OmniPert: A Deep Learning Foundation Model for...

Bioinformatics
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librarian
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Characterization of selective pressures acting on protein sites with Deep Learning

Characterization of selective pressures acting...

Bioinformatics
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librarian
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STELLA: Self-Evolving LLM Agent for Biomedical Research

STELLA: Self-Evolving LLM Agent for Biomedical...

Bioinformatics
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Zaixi Zhang
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GatorST: A Versatile Contrastive Meta-Learning Framework for Spatial Transcriptomic Data Analysis

GatorST: A Versatile Contrastive Meta-Learning...

Bioinformatics
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librarian
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Fold-Conditioned De Novo Binder Design via AlphaFold2-Multimer Hallucination.

Fold-Conditioned De Novo Binder Design via Alp...

Bioinformatics
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librarian
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Modelling punctuated similarity

Modelling punctuated similarity

Bioinformatics
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Sarah Crockford
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A moderated statistical test for detecting shifts in homeolog expression ratios in allopolyploids

A moderated statistical test for detecting shi...

Bioinformatics
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librarian
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DiffMethylTools: a toolbox of the detection, annotation and visualization of differential DNA methylation

DiffMethylTools: a toolbox of the detection, a...

Bioinformatics
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librarian
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PULPO: Pipeline of understanding large-scale patterns of oncogenomic signatures

PULPO: Pipeline of understanding large-scale p...

Bioinformatics
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librarian
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Sequence Analysis of P4-ATPases Reveals the Structural Determinants for the Stable Monomeric P4B-ATPase Phospholipid Transporters.

Sequence Analysis of P4-ATPases Reveals the St...

Bioinformatics
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Jyh-Yeuan Lee
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An Intrinsic-hoc Framework for Heterogeneous Cellular Senescence Elucidation Using Deep Graph Representation Learning and Experimental Validation

An Intrinsic-hoc Framework for Heterogeneous C...

Bioinformatics
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librarian
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Combining AI structure prediction and integrative modelling for nanobody-antigen complexes

Combining AI structure prediction and integrat...

Bioinformatics
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librarian
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NANOME: A Nextflow pipeline for haplotype-aware allele-specific consensus DNA methylation detection by nanopore long-read sequencing

NANOME: A Nextflow pipeline for haplotype-awar...

Bioinformatics
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librarian
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OmniCorr: An R-package for visualizing putative host-microbiota interactions using multi-omics data

OmniCorr: An R-package for visualizing putativ...

Bioinformatics
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librarian
3 views
Rapid and Reproducible Multimodal Biological Foundation Model Development with AIDO.ModelGenerator

Rapid and Reproducible Multimodal Biological F...

Bioinformatics
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librarian
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Uncertainty-Aware Discrete Diffusion Improves Protein Design

Uncertainty-Aware Discrete Diffusion Improves ...

Bioinformatics
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librarian
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Models and Algorithms for Equilibrium Analysis of Mixed-Material Nucleic Acid Systems

Models and Algorithms for Equilibrium Analysis...

Bioinformatics
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librarian
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MarkerMatch: A Proximity-Based Probe-Matching Algorithm for Joint Analysis of Copy-Number Variants from Different Genotyping Arrays

MarkerMatch: A Proximity-Based Probe-Matching ...

Bioinformatics
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Franjo Ivankovic
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Human gut flagellome profiling using FlaPro reveals TLR5-related phenotype-specific alterations in IBD

Human gut flagellome profiling using FlaPro re...

Bioinformatics
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librarian
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Telomeric Repeat-Containing lncRNA TERRA Targets Non-Telomeric DNA in Trans via R-Loops

Telomeric Repeat-Containing lncRNA TERRA Targe...

Bioinformatics
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Roshan Vaid
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Unbiased whole genome comparison of Pan paniscus (bonobo) and Homo sapiens (human) through a novel sequence match-based approach

Unbiased whole genome comparison of Pan panisc...

Bioinformatics
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Celestino Velásquez
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STRAND: Structure Refinement of RNA-Protein Complexes via Diffusion

STRAND: Structure Refinement of RNA-Protein Co...

Bioinformatics
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librarian
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The enduring advantages of the SLOW5 file format for raw nanopore sequencing data

The enduring advantages of the SLOW5 file form...

Bioinformatics
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librarian
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CENTRA: Knowledge-Based Gene Contexuality Graphs Reveal Functional Master Regulators by Centrality and Fractality

CENTRA: Knowledge-Based Gene Contexuality Grap...

Bioinformatics
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Frank Hause
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RNAtive to recognize native-like structure in a set of RNA 3D models

RNAtive to recognize native-like structure in ...

Bioinformatics
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Tomasz Zok
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PathCLAST: Pathway-Augmented Contrastive Learning with Attention for Spatial Transcriptomics

PathCLAST: Pathway-Augmented Contrastive Learn...

Bioinformatics
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Sangsoo Lim
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Accurate Protein-Protein Interactions Modeling through Physics-informed Geometric Invariant Learning

Accurate Protein-Protein Interactions Modeling...

Bioinformatics
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librarian
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Structural and dynamic study of fungal cell wall degrading fungal chitinase and its interaction with chitooligosaccharide

Structural and dynamic study of fungal cell wa...

Bioinformatics
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librarian
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Know your RNA-Seq data in depth: a case study using data from early life stress in mouse

Know your RNA-Seq data in depth: a case study ...

Bioinformatics
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librarian
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PROFET Predicts Continuous Gene Expression Dynamics from scRNA-seq Data to Elucidate Heterogeneity of Cancer Treatment Responses

PROFET Predicts Continuous Gene Expression Dyn...

Bioinformatics
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librarian
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Spliformer-v2 predicts multi-tissue RNA splicing and reveals functional genomic links with neurodegenerative diseases

Spliformer-v2 predicts multi-tissue RNA splici...

Bioinformatics
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librarian
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