Bioinformatics

MolUNet++: Adaptive-grained Explicit Substructure and Interaction Aware Molecular Representation Learning

MolUNet++: Adaptive-grained Explicit Substruct...

Bioinformatics
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librarian
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Benchmarking Large Language Models for Predictive Modeling in Biomedical Research With a Focus on Reproductive Health

Benchmarking Large Language Models for Predict...

Bioinformatics
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librarian
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Automated Discovery of Patterns in T-Cell Receptor Physicochemical Signatures

Automated Discovery of Patterns in T-Cell Rece...

Bioinformatics
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librarian
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DREAM-GNN: Dual-route embedding-aware graph neural networks for drug repositioning

DREAM-GNN: Dual-route embedding-aware graph ne...

Bioinformatics
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librarian
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Inferring physical cell-cell communication networks from scRNAseq data using univariate linear models.

Inferring physical cell-cell communication net...

Bioinformatics
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librarian
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MuSHIN: A multi-way SMILES-based hypergraph inference network for metabolic model reconstruction

MuSHIN: A multi-way SMILES-based hypergraph in...

Bioinformatics
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Ren Wang
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AmyloGram Reveals Amyloidogenic Potential in Stroke Thrombus Proteomes

AmyloGram Reveals Amyloidogenic Potential in S...

Bioinformatics
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librarian
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A LARGE-SCALE EVOLUTIONARY AND STRUCTURAL ANALYSIS OF CLC CHANNELS AND TRANSPORTERS

A LARGE-SCALE EVOLUTIONARY AND STRUCTURAL ANAL...

Bioinformatics
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librarian
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Tissue-Specific Co-Expression Patterns of BAF Complexes Provide Regulatory Insights Across Human Tissues with Implications for Endocrine and Non-Endocrine Functions

Tissue-Specific Co-Expression Patterns of BAF ...

Bioinformatics
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librarian
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GeneInsight: Condensing Gene Set Knowledge via Language Models

GeneInsight: Condensing Gene Set Knowledge via...

Bioinformatics
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librarian
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HaploThread: A Scalable Integrated Desktop Platform for Constructing and Visualizing Haplotype Networks for Large-sample Sequences

HaploThread: A Scalable Integrated Desktop Pla...

Bioinformatics
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librarian
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Accurate Site-specific Folding via Conditional Diffusion Based on Alphafold3

Accurate Site-specific Folding via Conditional...

Bioinformatics
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Junmei Wang
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Wnt signaling promotes inflammation and EMT-associated gene expression in mesenchymal TNBC

Wnt signaling promotes inflammation and EMT-as...

Bioinformatics
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Ramón García-Areas
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A Corporative Language Model for Protein-Protein Interaction, Binding Affinity, and Interface Contact Prediction

A Corporative Language Model for Protein-Prote...

Bioinformatics
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librarian
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Population-level structural variant characterization from pangenome graph

Population-level structural variant characteri...

Bioinformatics
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librarian
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BrainBeacon: A Cross-Species Foundation Model for Single-cell Resolved Brain Spatial Transcriptomics

BrainBeacon: A Cross-Species Foundation Model ...

Bioinformatics
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Wu Wei
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Rehabilitating the benefits of gene tree correction in the presence of incomplete lineage sorting

Rehabilitating the benefits of gene tree corre...

Bioinformatics
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librarian
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ODFormer: a Virtual Organoid for Predicting Personalized Therapeutic Responses in Pancreatic Cancer

ODFormer: a Virtual Organoid for Predicting Pe...

Bioinformatics
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Luonan Chen
1 view
PromptBio: A Multi-Agent AI Platform for Bioinformatics Data Analysis

PromptBio: A Multi-Agent AI Platform for Bioin...

Bioinformatics
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KC Shashidhar
2 views
An Efficient Graph Algorithm for Diploid Local Ancestry Inference

An Efficient Graph Algorithm for Diploid Local...

Bioinformatics
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Benedict Paten
1 view
GARN3: A coarse-grained helix centered technique for RNA 3D structures prediction

GARN3: A coarse-grained helix centered techniq...

Bioinformatics
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Jhonatan Silva
2 views
GREmLN: A Cellular Regulatory Network-Aware Transcriptomics Foundation Model

GREmLN: A Cellular Regulatory Network-Aware Tr...

Bioinformatics
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librarian
6 views
The phylodynamic threshold of measurably evolving populations

The phylodynamic threshold of measurably evolv...

Bioinformatics
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Ariane Weber
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Evaluating microbial network inference methods: Moving beyond synthetic data with reproducibility-driven benchmarks

Evaluating microbial network inference methods...

Bioinformatics
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librarian
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CAPTAIN: A multimodal foundation model pretrained on co-assayed single-cell RNA and protein

CAPTAIN: A multimodal foundation model pretrai...

Bioinformatics
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Yan Zhang
2 views
BAGEL: Protein Engineering via Exploration of an Energy Landscape

BAGEL: Protein Engineering via Exploration of ...

Bioinformatics
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Jakub Lála
18 views
A novel subtyping method for TNBC with implications for prognosis and therapy

A novel subtyping method for TNBC with implica...

Bioinformatics
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Shankar Subramaniam
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GAME: Genomic API for Model Evaluation

GAME: Genomic API for Model Evaluation

Bioinformatics
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librarian
2 views
Mechanism-Aware Protein-Protein Interaction Prediction via Contact-Guided Dual Attention on Protein Language Models

Mechanism-Aware Protein-Protein Interaction Pr...

Bioinformatics
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Sheng-you Huang
6 views
The evolution of function in the DNA binding domain of the CRP/FNR family

The evolution of function in the DNA binding d...

Bioinformatics
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librarian
1 view
Statistical knockoffs improve biomarker discovery fromtranscriptomic data

Statistical knockoffs improve biomarker discov...

Bioinformatics
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Florian Massip
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Undersampling techniques for non-linear chemical space visualization

Undersampling techniques for non-linear chemic...

Bioinformatics
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librarian
4 views
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