Bioinformatics

CytoAnalyst: A web-based platform for comprehensive single-cell RNA sequencing analysis

CytoAnalyst: A web-based platform for comprehe...

Bioinformatics
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librarian
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DTMol: Pocket-based Molecular Docking using Diffusion Transformers

DTMol: Pocket-based Molecular Docking using Di...

Bioinformatics
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librarian
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MPBind: Multitask Protein Binding Site Prediction by Protein Language Models and Equivariant Graph Neural Networks

MPBind: Multitask Protein Binding Site Predict...

Bioinformatics
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librarian
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A novel decoding strategy for ProteinMPNN to design with less MHC Class I immune-visibility

A novel decoding strategy for ProteinMPNN to d...

Bioinformatics
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librarian
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StACKER, A TOOL FOR SYSTEMS LEVEL ANALYSIS OF BASE STACKING IN NUCLEOTIDE-RICH STRUCTURES

StACKER, A TOOL FOR SYSTEMS LEVEL ANALYSIS OF ...

Bioinformatics
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librarian
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Assessing the relation between protein phosphorylation, AlphaFold3 models and conformational variability

Assessing the relation between protein phospho...

Bioinformatics
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librarian
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SM3DD with Segmented PCA: A Comprehensive Method for Interpreting 3D Spatial Transcriptomics

SM3DD with Segmented PCA: A Comprehensive Meth...

Bioinformatics
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Arutha Kulasinghe
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DTractor enhances cell type deconvolution in spatial transcriptomics by integrating deep neural networks, transfer learning, and matrix factorization

DTractor enhances cell type deconvolution in s...

Bioinformatics
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librarian
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Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models, with PathogenFinder2

Whole-genome prediction of bacterial pathogeni...

Bioinformatics
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librarian
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DSSP 4: FAIR annotation of protein secondary structure

DSSP 4: FAIR annotation of protein secondary s...

Bioinformatics
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Robbie Joosten
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stPipe: A flexible and streamlined R/Bioconductor pipeline for preprocessing sequencing-based spatial transcriptomics data

stPipe: A flexible and streamlined R/Bioconduc...

Bioinformatics
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librarian
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Studying cis-regulatory heterogeneity in single-cells at allelic resolution

Studying cis-regulatory heterogeneity in singl...

Bioinformatics
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librarian
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Efficient near telomere-to-telomere assembly of Nanopore Simplex reads

Efficient near telomere-to-telomere assembly o...

Bioinformatics
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librarian
11 views
panomiX: Investigating Mechanisms Of Trait Emergence Through Multi-Omics Data Integration

panomiX: Investigating Mechanisms Of Trait Eme...

Bioinformatics
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librarian
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Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention

Predicting RNA 3D structure and conformers usi...

Bioinformatics
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Jianyi Yang
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Expanding the Orchidaceae Virome Through Analysis of Public-Domain Sequencing Data

Expanding the Orchidaceae Virome Through Analy...

Bioinformatics
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librarian
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Assessing scoring metrics for AlphaFold2 and AlphaFold3 protein complex predictions

Assessing scoring metrics for AlphaFold2 and A...

Bioinformatics
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Maya Topf
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Scaling Large Language Models for Next-Generation Single-Cell Analysis

Scaling Large Language Models for Next-Generat...

Bioinformatics
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Syed Asad Rizvi
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Can interpretability and accuracy coexist in cancer survival analysis?

Can interpretability and accuracy coexist in c...

Bioinformatics
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librarian
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Global and cross-omics feature aggregation improves single-cell multi-omics integration and clustering

Global and cross-omics feature aggregation imp...

Bioinformatics
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librarian
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BRIDGE: A Coarse-Grained Architecture to Embed Protein-Protein Interactions for Therapeutic Applications

BRIDGE: A Coarse-Grained Architecture to Embed...

Bioinformatics
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Pranav Khade
20 views
GeST: Towards Building A Generative Pretrained Transformer for Learning Cellular Spatial Context

GeST: Towards Building A Generative Pretrained...

Bioinformatics
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librarian
2 views
Expression and In-silico Structural analysis of N-acetylglucosamine transporter, Ngt1 in model fungal pathogen, Candida albicans

Expression and In-silico Structural analysis o...

Bioinformatics
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librarian
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ChromeCRISPR - A High Efficacy Hybrid Machine Learning Model for CRISPR/Cas On-Target Predictions

ChromeCRISPR - A High Efficacy Hybrid Machine ...

Bioinformatics
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Kay Wiese
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Prediction of quantitative function of artificially-designed protein from structural information

Prediction of quantitative function of artific...

Bioinformatics
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librarian
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Computational Evaluation of Phytochemicals as Potential Anti-HIV Drugs Targeting CCR5 and CXCR4 Receptors

Computational Evaluation of Phytochemicals as ...

Bioinformatics
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Ripa Moni
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Pangebin: improving plasmid binning in bacterial isolates using pangenome-assembly graphs.

Pangebin: improving plasmid binning in bacteri...

Bioinformatics
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librarian
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Benchmarking single cell transcriptome matching methods for incremental growth of reference atlases

Benchmarking single cell transcriptome matchin...

Bioinformatics
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Richard Scheuermann
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A Benchmarking Platform for Assessing Protein Language Models on Function-related Prediction Tasks

A Benchmarking Platform for Assessing Protein ...

Bioinformatics
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Tunca Doan
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Disentanglement of batch effects and biological signals across conditions in the single-cell transcriptome

Disentanglement of batch effects and biologica...

Bioinformatics
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librarian
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Predicting 3D Chromatin Interactions Using Transformer-Enhanced Deep Learning Models

Predicting 3D Chromatin Interactions Using Tra...

Bioinformatics
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librarian
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Inferring non-coding RNA regulatory network from transcriptomic data and curated databases

Inferring non-coding RNA regulatory network fr...

Bioinformatics
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librarian
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