Bioinformatics

Rapid phylogenomic analysis for viral surveillance and metagenomic profiling with Omni2Tree

Rapid phylogenomic analysis for viral surveill...

Bioinformatics
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librarian
2 views
SpatialBench: Comparative cross-platform benchmarking of high-resolution spatial transcriptomics using matched mouse lymphoid tissue

SpatialBench: Comparative cross-platform bench...

Bioinformatics
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librarian
4 views
Artificial intelligence aided design of peptides with custom secondary structure motifs and reduced amino acid alphabets

Artificial intelligence aided design of peptid...

Bioinformatics
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Scott Dean
6 views
Scan Cluster: A versatile database-independent prediction tool for multi-genome identification of homologous gene clusters.

Scan Cluster: A versatile database-independent...

Bioinformatics
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Mauricio Lozano
3 views
From Generalist to Specialist: Evolution of PS2 α-integrins and Implications for Drug Targeting

From Generalist to Specialist: Evolution of PS...

Bioinformatics
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librarian
5 views
Modeling healthy proteomic profiles for anomaly detection using subspace learning based one-class classification

Modeling healthy proteomic profiles for anomal...

Bioinformatics
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librarian
5 views
OmniAge: a compendium of aging omic biomarkers links mitotic clocks to clonal hematopoiesis and causality

OmniAge: a compendium of aging omic biomarkers...

Bioinformatics
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librarian
5 views
Single nucleus transcriptome analysis of Arabidopsis thaliana roots infected with Phytophthora. capsici

Single nucleus transcriptome analysis of Arabi...

Bioinformatics
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Song Li
6 views
Aiki-GeNano: Multi-Stage Preference Optimization for Generative Design of Developable Nanobodies

Aiki-GeNano: Multi-Stage Preference Optimizati...

Bioinformatics
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Venkatesh Mysore
8 views
Differential peripheral immune dynamics underlie therapeutic response to chemotherapy and chemo-immunotherapy in triple-negative breast cancer

Differential peripheral immune dynamics underl...

Bioinformatics
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Shankar Subramaniam
7 views
Reconstructing True 3D Spatial Omics at Single-Cell Resolution

Reconstructing True 3D Spatial Omics at Single...

Bioinformatics
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librarian
6 views
Skill-Augmented Frontier Agents Nearly Saturate BixBench-Verified-50

Skill-Augmented Frontier Agents Nearly Saturat...

Bioinformatics
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librarian
6 views
A high-quality, chromosome-scale genome assembly of the shade-tolerant wild rice, Oryza granulata

A high-quality, chromosome-scale genome assemb...

Bioinformatics
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librarian
6 views
Rapid-PFP: Accelerating Prefix-Free Parsing with GPU Parallelism

Rapid-PFP: Accelerating Prefix-Free Parsing wi...

Bioinformatics
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librarian
6 views
JUMPlion improves quantitative DIA proteomics through ion-level recovery of missing values

JUMPlion improves quantitative DIA proteomics ...

Bioinformatics
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Yingxue Fu
5 views
Single-cell foundation models reveal context-sensitive cancer programmes under subtype shift

Single-cell foundation models reveal context-s...

Bioinformatics
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librarian
5 views
SPPIDER-seq: Sequence-based partner-aware predictor of protein-protein interaction sites

SPPIDER-seq: Sequence-based partner-aware pred...

Bioinformatics
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Aleksey Porollo
7 views
ZonationR: An R interface to the Zonation software for reproducible spatial conservation prioritisation workflows

ZonationR: An R interface to the Zonation soft...

Bioinformatics
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Thiago Cavalcante
6 views
SubCellSpace: Automated characterization of subcellular mRNA localization patterns in spatial transcriptomics

SubCellSpace: Automated characterization of su...

Bioinformatics
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librarian
8 views
rhapsodist: a reproducible Snakemake workflow for BD~Rhapsody single-cell RNA-seq data

rhapsodist: a reproducible Snakemake workflow ...

Bioinformatics
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librarian
8 views
DCAFA: Differential Community Abundance and Feature Analysis for Histological Images

DCAFA: Differential Community Abundance and Fe...

Bioinformatics
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librarian
9 views
Isolation and Genomic Characterization of Myxococcus faecalis Strains from Mangroves in Southeastern Brazil

Isolation and Genomic Characterization of Myxo...

Bioinformatics
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librarian
7 views
CHAMPOLLION: Robust Multi-Omics Integration via Inverse Optimal Transport Using Paired Cells

CHAMPOLLION: Robust Multi-Omics Integration vi...

Bioinformatics
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librarian
6 views
ICON: An isoform-aware hierarchical random forest model for cell type classification

ICON: An isoform-aware hierarchical random for...

Bioinformatics
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librarian
6 views
Dynamical instability measured by temporal entropy improves psychiatric classification across cohorts

Dynamical instability measured by temporal ent...

Bioinformatics
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Tatsuma Shoji
5 views
Species-specific transformer models of bacterial gene order and content for genomic surveillance tasks

Species-specific transformer models of bacteri...

Bioinformatics
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librarian
7 views
A Conditional Variational Autoencoder with QSAR-Guided Surrogate-Weighted Fine-Tuning and Cross-Entropy Optimization for Targeted Antimicrobial Peptide Generation

A Conditional Variational Autoencoder with QSA...

Bioinformatics
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librarian
5 views
Systems Pharmacology Reveals Type I Interferon and Myeloid-Like B Cell Reprogramming as Druggable Axes in Antiphospholipid Syndrome

Systems Pharmacology Reveals Type I Interferon...

Bioinformatics
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librarian
5 views
CountESS: a flexible, graphical pipeline tool for deep mutational scanning analysis

CountESS: a flexible, graphical pipeline tool ...

Bioinformatics
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Alan Rubin
6 views
Molecular Translators as a Computational Primitive for Biomarker Discovery: Learnability Gains Under Conserved Information Ceilings

Molecular Translators as a Computational Primi...

Bioinformatics
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librarian
7 views
TxConformal: Controlling False Discoveries in AI-Driven Therapeutic Discovery

TxConformal: Controlling False Discoveries in ...

Bioinformatics
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librarian
8 views
linearPOA: A parallel, memory-efficient framework for Partial Order Alignment with linear space complexity

linearPOA: A parallel, memory-efficient framew...

Bioinformatics
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librarian
7 views
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