Bioinformatics

Bridging Worlds: Connecting Glycan Representations with Glycoinformatics via Universal Input and a Canonicalized Nomenclature

Bridging Worlds: Connecting Glycan Representat...

Bioinformatics
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librarian
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Gene Loss DB: A curated database for gene loss in vertebrate species.

Gene Loss DB: A curated database for gene loss...

Bioinformatics
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librarian
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A Transcriptomics-Based Computational Drug Repositioning Pipeline Identifies Simvastatin And Primaquine As Novel Therapeutics For Endometriosis Pain

A Transcriptomics-Based Computational Drug Rep...

Bioinformatics
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Tomiko Oskotsky
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Integrating process, proximity, and prediction implicates novel protein and RNA interactions in human Origin Recognition Complex function

Integrating process, proximity, and prediction...

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John Smolka
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CNAttention: an attention-based deep multiple-instance method for uncovering CNA signatures across cancers

CNAttention: an attention-based deep multiple-...

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Michael Baudis
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SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads

SNP calling, haplotype phasing and allele-spec...

Bioinformatics
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Heng Li
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From Hype to Health Check: Critical Evaluation of Drug Response Prediction Models with DrEval

From Hype to Health Check: Critical Evaluation...

Bioinformatics
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librarian
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DoggifAI: a transformer based approach for antibodycaninisation

DoggifAI: a transformer based approach for ant...

Bioinformatics
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Dominik Grabarczyk
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mt.surv: Multi-Threshold Survival Analysis for Associating Continuous Predictor Variables with Time-to-Event Outcomes

mt.surv: Multi-Threshold Survival Analysis for...

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librarian
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AlphaFold modeling of polyubiquitin complexes and covalently linked proteins

AlphaFold modeling of polyubiquitin complexes ...

Bioinformatics
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librarian
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Hierarchical prediction and perturbation of chromatin organization reveal how loop domains mediate higher-order architectures

Hierarchical prediction and perturbation of ch...

Bioinformatics
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librarian
3 views
Circos Plots for Genome Level Interpretation of Genomic Prediction Models

Circos Plots for Genome Level Interpretation o...

Bioinformatics
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librarian
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Hybrid Deep Learning with Protein Language Models and Dual-Path Architecture for Predicting IDP Functions

Hybrid Deep Learning with Protein Language Mod...

Bioinformatics
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Zhenling Peng
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House of Clocks: On the Misuse of Ageing Composite Measures

House of Clocks: On the Misuse of Ageing Compo...

Bioinformatics
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librarian
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Identifying Molecular Determinants and Therapeutic Targets in Luminal B Breast Cancer: A Systems Biology Approach

Identifying Molecular Determinants and Therape...

Bioinformatics
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librarian
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Spatiotemporal transcriptomic analysis during cold ischemic injury to the murine kidney reveals compartment-specific changes

Spatiotemporal transcriptomic analysis during ...

Bioinformatics
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librarian
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Decoupled Information Theoretic Feature Selection for Rapid Protein Key Tuning Residue Identification

Decoupled Information Theoretic Feature Select...

Bioinformatics
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librarian
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LlamaAffinity: A Predictive Antibody Antigen Binding Model Integrating Antibody Sequences with Llama3 Backbone Architecture

LlamaAffinity: A Predictive Antibody Antigen B...

Bioinformatics
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librarian
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Acoustic individual identification in a species of field cricket using deep learning

Acoustic individual identification in a specie...

Bioinformatics
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librarian
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Characterizing antibodies binding to the same epitope reveals limited contribution by heavy chain CDR3 sequences relative to other CDRs

Characterizing antibodies binding to the same ...

Bioinformatics
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librarian
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Multi-scale early warning system for influenza A spillovers

Multi-scale early warning system for influenza...

Bioinformatics
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librarian
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Deconvolution of multiplexed peptidoform mass spectra enables high-resolution profiling of complex protein modification patterns

Deconvolution of multiplexed peptidoform mass ...

Bioinformatics
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librarian
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pLM-SAV: A Δ-Embedding Approach for Predicting Pathogenic Single Amino Acid Variants

pLM-SAV: A Δ-Embedding Approach for Predicting...

Bioinformatics
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librarian
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Inference of marker genes of subtle cell state changes via iterative logistic regression

Inference of marker genes of subtle cell state...

Bioinformatics
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librarian
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Evaluation of network inference algorithms for derivation of metabolic relationships from lipidomic and metabolomic datasets

Evaluation of network inference algorithms for...

Bioinformatics
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librarian
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Joint Modeling of Longitudinal Biomarker and Survival Outcomes with the Presence of Competing Risk in Nested Case-Control Studies with Application to the TEDDY Microbiome Dataset

Joint Modeling of Longitudinal Biomarker and S...

Bioinformatics
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librarian
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Sequencing the gaps: dark genomic regions persist in CHM13 despite long-read advances

Sequencing the gaps: dark genomic regions pers...

Bioinformatics
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librarian
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Automated evaluation of single-cell reference atlas mappings enables the identification of disease-associated cell states

Automated evaluation of single-cell reference ...

Bioinformatics
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librarian
4 views
PerTurboAgent: A Self-Planning Agent for Boosting Sequential Perturb-seq Experiments

PerTurboAgent: A Self-Planning Agent for Boost...

Bioinformatics
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librarian
12 views
Beyond performance: How design choices shape chemical language models

Beyond performance: How design choices shape c...

Bioinformatics
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librarian
4 views
Updated chromosome-level genome assembly of Sporisorium scitamineum with improved accuracy and completeness

Updated chromosome-level genome assembly of Sp...

Bioinformatics
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librarian
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Alignment-driven Cross-Graph Modeling for 3D RNA Inverse Folding

Alignment-driven Cross-Graph Modeling for 3D R...

Bioinformatics
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librarian
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