Bioinformatics

ProteinCLIP: enhancing protein language models with natural language

ProteinCLIP: enhancing protein language models...

Bioinformatics
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librarian
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CellWalker2: multi-omic discovery of hierarchical cell type relationships and their associations with genomic annotations

CellWalker2: multi-omic discovery of hierarchi...

Bioinformatics
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librarian
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scAI-SNP: a method for inferring ancestry from single-cell data

scAI-SNP: a method for inferring ancestry from...

Bioinformatics
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librarian
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Large-scale estimation of bacterial and archaeal DNA prevalence in metagenomes reveals biome-specific patterns

Large-scale estimation of bacterial and archae...

Bioinformatics
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Raphael Eisenhofer
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ADAPT: Analysis of Microbiome Differential Abundance by Pooling Tobit Models

ADAPT: Analysis of Microbiome Differential Abu...

Bioinformatics
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librarian
3 views
CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference

CLEAN-Contact: Contrastive Learning-enabled En...

Bioinformatics
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Jeremy Zucker
2 views
Immunopipe: A comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline

Immunopipe: A comprehensive and flexible scRNA...

Bioinformatics
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librarian
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Connection Building Method: High-Accuracy MicroRNA Target Prediction Using Disease Semantic Strings

Connection Building Method: High-Accuracy Micr...

Bioinformatics
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librarian
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Predicting pain genes: multi-modal data integration using probabilistic classifiers and interaction networks

Predicting pain genes: multi-modal data integr...

Bioinformatics
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librarian
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GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation

GeoAB: Towards Realistic Antibody Design and R...

Bioinformatics
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librarian
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Neuronal phenotype defined by transcriptome-wide bursting kinetics in pyramidal and fast-spiking cells

Neuronal phenotype defined by transcriptome-wi...

Bioinformatics
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librarian
5 views
Flawed machine-learning confounds coding sequence annotation

Flawed machine-learning confounds coding seque...

Bioinformatics
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librarian
6 views
Unveiling Tissue Structure and Tumor Microenvironment from Spatially Resolved Transcriptomics by Hypergraph Learning

Unveiling Tissue Structure and Tumor Microenvi...

Bioinformatics
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librarian
5 views
PathoGD: an integrative genomics approach for CRISPR-based target design of rapid pathogen diagnostics

PathoGD: an integrative genomics approach for ...

Bioinformatics
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librarian
7 views
Decoding glycosylation potential from protein structure across human glycoproteins with a multi-view recurrent neural network

Decoding glycosylation potential from protein ...

Bioinformatics
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librarian
7 views
Phylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility

Phylogenetic-based methods for fine-scale clas...

Bioinformatics
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librarian
9 views
CellAgent: An LLM-driven Multi-Agent Framework for Automated Single-cell Data Analysis

CellAgent: An LLM-driven Multi-Agent Framework...

Bioinformatics
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Jianye Hao
10 views
Classifying Genetic Interactions Using an HIV Experimental Study

Classifying Genetic Interactions Using an HIV ...

Bioinformatics
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librarian
9 views
Unveiling Conserved Allosteric Hot Spots in Protein Domains from Sequences

Unveiling Conserved Allosteric Hot Spots in Pr...

Bioinformatics
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Aysima Hacisuleyman
6 views
Quantifying uncertainty in RNA velocity

Quantifying uncertainty in RNA velocity

Bioinformatics
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librarian
9 views
Cluster efficient pangenome graph construction with nf-core/pangenome

Cluster efficient pangenome graph construction...

Bioinformatics
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librarian
10 views
FlaHMM: unistrand flamenco-like piRNA cluster prediction in Drosophila species using hidden Markov models

FlaHMM: unistrand flamenco-like piRNA cluster ...

Bioinformatics
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librarian
11 views
AFFIPred: AlphaFold2 Structure-based Functional Impact Prediction of Missense Variations

AFFIPred: AlphaFold2 Structure-based Functiona...

Bioinformatics
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Emel Timucin
12 views
AAnet resolves a continuum of spatially-localized cell states to unveil tumor complexity

AAnet resolves a continuum of spatially-locali...

Bioinformatics
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librarian
6 views
COCOA: A Framework for Fine-scale Mapping Cell-type-specific Chromatin Compartmentalization Using Epigenomic Information

COCOA: A Framework for Fine-scale Mapping Cell...

Bioinformatics
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librarian
6 views
Reconstructing parent genomes using siblings and other relatives

Reconstructing parent genomes using siblings a...

Bioinformatics
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librarian
5 views
IFDlong: an isoform and fusion detector for accurate annotation and quantification of long-read RNA-seq data

IFDlong: an isoform and fusion detector for ac...

Bioinformatics
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librarian
5 views
Spatial Coherence of DNA Barcode Networks

Spatial Coherence of DNA Barcode Networks

Bioinformatics
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Ian Hoffecker
4 views
Variant effect predictor correlation with functional assays is reflective of clinical classification performance

Variant effect predictor correlation with func...

Bioinformatics
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librarian
7 views
Compositional restrictions in the flanking regions give potential specificity and strength boost to binding in short linear motifs

Compositional restrictions in the flanking reg...

Bioinformatics
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librarian
6 views
Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data

Cross-domain information fusion for enhanced c...

Bioinformatics
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librarian
6 views
Inferred Developmental Origins of Brain Tumors from Single Cell RNA-Sequencing Data

Inferred Developmental Origins of Brain Tumors...

Bioinformatics
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librarian
4 views
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