Bioinformatics

Self-iterative multiple instance learning enables the prediction of CD4+ T cell immunogenic epitopes

Self-iterative multiple instance learning enab...

Bioinformatics
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librarian
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scCausalVI disentangles single-cell perturbation responses with causality-aware generative model

scCausalVI disentangles single-cell perturbati...

Bioinformatics
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Martin Hemberg
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Comparative Extraction of Cellular Features from High-Resolution Volume Imaging

Comparative Extraction of Cellular Features fr...

Bioinformatics
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librarian
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Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins

Residue conservation and solvent accessibility...

Bioinformatics
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Matsvei Tsishyn
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A novel deep optimal transport framework reveals prostate cancer risk heterogeneity, Alzheimers disease risk heterogeneity, and myeloma cells associated with a short-term sham bortezomib response and progressive disease

A novel deep optimal transport framework revea...

Bioinformatics
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librarian
2 views
Discovery of Epigenetically Silenced Tumor Suppressor Genes in Aggressive Breast Cancer Through a Computational Approach

Discovery of Epigenetically Silenced Tumor Sup...

Bioinformatics
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librarian
1 view
Comparative Analysis of Machine Learning Libraries for Neural Networks: A Benchmarking Study

Comparative Analysis of Machine Learning Libra...

Bioinformatics
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Salameh Mjlae
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GeNePi: a GPU-enhanced Next Generation Bioinformatics Pipeline for Whole Genome Sequencing Analysis

GeNePi: a GPU-enhanced Next Generation Bioinfo...

Bioinformatics
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Andrea Cavalli
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SVCFit: Inferring structural variant cellular fraction in tumors

SVCFit: Inferring structural variant cellular ...

Bioinformatics
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Rachel Karchin
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sciLaMA: A Single-Cell Representation Learning Framework to Leverage Prior Knowledge from Large Language Models

sciLaMA: A Single-Cell Representation Learning...

Bioinformatics
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librarian
2 views
MassVision: An Open-Source End-to-End Platform for AI-Driven Mass Spectrometry Image Analysis

MassVision: An Open-Source End-to-End Platform...

Bioinformatics
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Amoon Jamzad
2 views
vcfsim: flexible simulation of all-sites VCFs with missing data

vcfsim: flexible simulation of all-sites VCFs ...

Bioinformatics
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librarian
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FISHNET: A Network-based Tool for Analyzing Gene-level P-values to Identify Significant Genes Missed by Standard Methods

FISHNET: A Network-based Tool for Analyzing Ge...

Bioinformatics
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librarian
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Benchmarking Long-read Sequencing Tools for Chromosome End-specific Telomere Analysis

Benchmarking Long-read Sequencing Tools for Ch...

Bioinformatics
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Jake Reed
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DARG: a Database of Alzheimer Related Genes in Model Organisms

DARG: a Database of Alzheimer Related Genes in...

Bioinformatics
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Yanhui Hu
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Decoding bacterial methylomes in four public health-relevant microbial species: Nanopore sequencing enables reproducible analysis of DNA modifications

Decoding bacterial methylomes in four public h...

Bioinformatics
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Valentina Galeone
10 views
Confounder-free Predictive Models for Microbiome-based Host Phenotype Prediction

Confounder-free Predictive Models for Microbio...

Bioinformatics
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Yuzhen Ye
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How Does Sampling Affect the AI Prediction Accuracy of Peptides' Physicochemical Properties?

How Does Sampling Affect the AI Prediction Acc...

Bioinformatics
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Haojin Zhou
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Evaluation of sequencing reads at scale using rdeval

Evaluation of sequencing reads at scale using ...

Bioinformatics
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librarian
2 views
SCGclust: Single Cell Graph clustering using graphautoencoders integrating SNVs and CNAs

SCGclust: Single Cell Graph clustering using g...

Bioinformatics
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librarian
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Beyond contacts: the important role of the support region to distinguish stable and transient protein interfaces

Beyond contacts: the important role of the sup...

Bioinformatics
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Tom Miclot
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What is a differentially expressed gene?

What is a differentially expressed gene?

Bioinformatics
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librarian
1 view
Potentials and limitations in the application of Convolutional Neural Networks for mosquito species identification using wing images

Potentials and limitations in the application ...

Bioinformatics
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Kristopher Nolte
1 view
AnchoRNA: Full virus genome alignments through conserved anchor regions

AnchoRNA: Full virus genome alignments through...

Bioinformatics
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librarian
0 views
Benchmarking gene embeddings from sequence, expression, network, and text models for functional prediction tasks

Benchmarking gene embeddings from sequence, ex...

Bioinformatics
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librarian
2 views
Predicting coarse-grained representations of biogeochemical cycles from metabarcoding data

Predicting coarse-grained representations of b...

Bioinformatics
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Arnaud Belcour
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VIVIDHA: Variant Prediction and Visualization Interface for Dynamic High-throughput Analysis

VIVIDHA: Variant Prediction and Visualization ...

Bioinformatics
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librarian
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Sources of non-uniform coverage in short-read RNA-Seq data

Sources of non-uniform coverage in short-read ...

Bioinformatics
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Thomas Brooks
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Interpretable Kolmogorov-Arnold Networks for Enzyme Commission Number Prediction

Interpretable Kolmogorov-Arnold Networks for E...

Bioinformatics
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librarian
2 views
Incorporating exon-exon junction reads enhances differential splicing detection

Incorporating exon-exon junction reads enhance...

Bioinformatics
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librarian
1 view
Theoretical and Empirical Performance of Pseudo-likelihood-based Bayesian Inference of Species Trees under the Multispecies Coalescent

Theoretical and Empirical Performance of Pseud...

Bioinformatics
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librarian
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ShapeME: A tool and web front-end for de novo discovery of structural motifs underpinning protein-DNA interactions

ShapeME: A tool and web front-end for de novo ...

Bioinformatics
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Jeremy Schroeder
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