Bioinformatics

SPACEc: A Streamlined, Interactive Python Workflow for Multiplexed Image Processing and Analysis

SPACEc: A Streamlined, Interactive Python Work...

Bioinformatics
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librarian
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Identification of cuproptosis and ferroptosis-related subtypes and development of a prognostic signature in colon cancer

Identification of cuproptosis and ferroptosis-...

Bioinformatics
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Zheng Jiang
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CoPR: Collective Pattern Recognition-a Framework for Microbial Community Activity Analysis

CoPR: Collective Pattern Recognition-a Framewo...

Bioinformatics
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Rajith Vidanaarachchi
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A graph-based practice of evaluating collective identities of cell clusters

A graph-based practice of evaluating collectiv...

Bioinformatics
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librarian
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e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology

e3SIM: epidemiological-ecological-evolutionary...

Bioinformatics
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librarian
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StarSignDNA: Signature tracing for accurate representation of mutational processes

StarSignDNA: Signature tracing for accurate re...

Bioinformatics
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Eivind Hovig
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MitoStructSeg: A Comprehensive Platform for Mitochondrial Structure Segmentation and Analysis

MitoStructSeg: A Comprehensive Platform for Mi...

Bioinformatics
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Xiaohua Wan
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Navigating the Maze of Mass Spectra: A Machine-Learning Guide to Identifying Diagnostic Ions in O-Glycan Analysis

Navigating the Maze of Mass Spectra: A Machine...

Bioinformatics
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librarian
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Active surveillance for influenza A virus in swine reveals within-farm reassortment and cocirculation of distinct subtypes and genetic clades

Active surveillance for influenza A virus in s...

Bioinformatics
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librarian
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ADM: Adaptive Graph Diffusion for Meta-Dimension Reduction

ADM: Adaptive Graph Diffusion for Meta-Dimensi...

Bioinformatics
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librarian
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Maloja: simple and scalable Snakemake workflow orchestration in the cloud

Maloja: simple and scalable Snakemake workflow...

Bioinformatics
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librarian
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SCEMENT: Scalable and Memory Efficient Integration of Large-scale Single Cell RNA-sequencing Data

SCEMENT: Scalable and Memory Efficient Integra...

Bioinformatics
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librarian
2 views
GenomeDelta: detecting recent transposable element invasions without repeat library

GenomeDelta: detecting recent transposable ele...

Bioinformatics
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librarian
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spatialGE: A user-friendly web application to democratize spatial transcriptomics analysis

spatialGE: A user-friendly web application to ...

Bioinformatics
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librarian
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Critical roles of Ikaros and HDAC1 in regulation of heterochromatin and tumor suppression in T-cell acute lymphoblastic leukemia

Critical roles of Ikaros and HDAC1 in regulati...

Bioinformatics
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Sinisa Dovat
1 view
Ultrafast and accurate sequence alignment and clustering of viral genomes

Ultrafast and accurate sequence alignment and ...

Bioinformatics
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librarian
1 view
APV9WR: An Integrated Web Resource of Alpha papillomavirus 9 for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis

APV9WR: An Integrated Web Resource of Alpha pa...

Bioinformatics
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librarian
2 views
GeneBag: training a cell foundation model for broad-spectrum cancer diagnosis and prognosis with bulk RNA-seq data

GeneBag: training a cell foundation model for ...

Bioinformatics
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librarian
2 views
Uncovering differential tolerance to deletions versus substitutions with a protein language model

Uncovering differential tolerance to deletions...

Bioinformatics
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librarian
3 views
Joint exome and metabolome analysis in individuals with dyslexia: Evidence for associated dysregulations of olfactory perception and autoimmune functions

Joint exome and metabolome analysis in individ...

Bioinformatics
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librarian
2 views
Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data

Castanet: a pipeline for rapid analysis of tar...

Bioinformatics
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Richard Mayne
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SCREEN: a graph-based contrastive learning tool to infer catalytic residues and assess mutation tolerance in enzymes

SCREEN: a graph-based contrastive learning too...

Bioinformatics
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librarian
5 views
TEtrimmer: a novel tool to automate the manual curation of transposable elements

TEtrimmer: a novel tool to automate the manual...

Bioinformatics
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Jiangzhao Qian
9 views
A hypercubic Mk model framework for capturing reversibility in disease, cancer, and evolutionary accumulation modelling

A hypercubic Mk model framework for capturing ...

Bioinformatics
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librarian
6 views
Encoding of T=1 virus capsid structures through the interfaces of oligomer subcomponents

Encoding of T=1 virus capsid structures throug...

Bioinformatics
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librarian
5 views
An efficient deep learning method for amino acid substitution model selection

An efficient deep learning method for amino ac...

Bioinformatics
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librarian
7 views
Deep Learning-Based Classification of CRISPR Loci Using Repeat Sequences

Deep Learning-Based Classification of CRISPR L...

Bioinformatics
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Xuequn Shang
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Phage display profiling of CDR3β loops enables machine learning predictions of NY-ESO-1 specific TCRs

Phage display profiling of CDR3β loops enables...

Bioinformatics
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Steven Dunn
7 views
TCRfinder: Improved TCR virtual screening for novel antigenic peptides with tailored language models

TCRfinder: Improved TCR virtual screening for ...

Bioinformatics
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librarian
10 views
Leveraging Basecaller's Move Table to Generate a Lightweight k-mer Model

Leveraging Basecaller's Move Table to Generate...

Bioinformatics
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librarian
5 views
Ultra-fast variant effect prediction using biophysical transcription factor binding models

Ultra-fast variant effect prediction using bio...

Bioinformatics
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librarian
15 views
CryoViT: Efficient Segmentation of Cryogenic Electron Tomograms with Vision Foundation Models

CryoViT: Efficient Segmentation of Cryogenic E...

Bioinformatics
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librarian
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