Bioinformatics

EVd3x: a source-attributed multi-omic platform for mapping extracellular vesicle cargo evidence

EVd3x: a source-attributed multi-omic platform...

Bioinformatics
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Jonathan Weerakkody
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BioMADE: Predicting Torsades de Pointes from molecular structures through biologically informed representations

BioMADE: Predicting Torsades de Pointes from m...

Bioinformatics
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librarian
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Efficient and Tidy Manipulation of Annotated Matrix Data with plyxp

Efficient and Tidy Manipulation of Annotated M...

Bioinformatics
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librarian
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Autoresearch Discovery of Interpretable Filter Rules for Antibody Binder Classification

Autoresearch Discovery of Interpretable Filter...

Bioinformatics
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Mikel Landajuela
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On the state of protein function prediction: a report on the fourth CAFA challenge

On the state of protein function prediction: a...

Bioinformatics
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librarian
1 view
miR-128 Regulates Hypertensive Vascular Remodeling via PPAR-γ

miR-128 Regulates Hypertensive Vascular Remode...

Bioinformatics
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librarian
2 views
eSkip2 prioritizes exon-skipping antisense oligonucleotide target regions across exon--intron contexts

eSkip2 prioritizes exon-skipping antisense oli...

Bioinformatics
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Toshifumi Yokota
2 views
SPIFEE - A pipeline for analyzing traces of live-cell fluorescence microscopy data

SPIFEE - A pipeline for analyzing traces of li...

Bioinformatics
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librarian
1 view
LAMPrEY: a Python-based automated quality control tool for large-scale proteomics datasets

LAMPrEY: a Python-based automated quality cont...

Bioinformatics
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librarian
2 views
PTM-dCN: Latent Space Control for Post-translational Modification-aware Protein Design

PTM-dCN: Latent Space Control for Post-transla...

Bioinformatics
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librarian
3 views
InterScale reveals multi-scale cellular interaction programs in spatial transcriptomics

InterScale reveals multi-scale cellular intera...

Bioinformatics
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librarian
2 views
SRSA-VAE: Self-Attention-Based Feature Learning for Single-Cell Multimodal Clustering

SRSA-VAE: Self-Attention-Based Feature Learnin...

Bioinformatics
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librarian
4 views
Temperate phage microdiversity reflects infant gut microbiome maturation independent of chronic undernutrition

Temperate phage microdiversity reflects infant...

Bioinformatics
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librarian
6 views
Deciphering the epitranscriptomic code of RNA degradation with nanopore direct RNA sequencing

Deciphering the epitranscriptomic code of RNA ...

Bioinformatics
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Zhang Zhang
8 views
AI-enabled virtual immunopeptidomics links quantitative neoantigen presentation to immunogenicity

AI-enabled virtual immunopeptidomics links qua...

Bioinformatics
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librarian
7 views
Deciphering the Molecular Structure of the Type III Secretion System in Chlamydia trachomatis for Structure-Based Therapeutic Targeting

Deciphering the Molecular Structure of the Typ...

Bioinformatics
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Anannya Bandyopadhyay
9 views
Know Your Alphabet: Conformational Noise, Latent-Space Encodings, and the Future of Structural Phylogenetics

Know Your Alphabet: Conformational Noise, Late...

Bioinformatics
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Ashar Malik
10 views
A structural grammar of truncation across the human homodimer landscape

A structural grammar of truncation across the ...

Bioinformatics
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librarian
6 views
Building an open ecosystem for molecular neuroimaging: standards and tools from the OpenNeuroPET initiative

Building an open ecosystem for molecular neuro...

Bioinformatics
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Gitte Knudsen
6 views
Cross Dataset Transcriptomic Analysis Identifies Oxidative Stress Inflammation Gene Networks Modulated by Nutrigenomic Interventions in Parkinson Disease

Cross Dataset Transcriptomic Analysis Identifi...

Bioinformatics
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Reza Ghiasvand
5 views
Machine learning cross-platform proteomic imputation enables protein quality scoring and replication of epidemiological associations

Machine learning cross-platform proteomic impu...

Bioinformatics
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Zhi Yu
8 views
PromptBio-Bench: Benchmarking LLM-based Bioinformatics Agents for End-to-End Data Analysis

PromptBio-Bench: Benchmarking LLM-based Bioinf...

Bioinformatics
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librarian
11 views
Open-Rosalind: Tool-First Biomedical LLM Agents with Process-Aware Benchmarking

Open-Rosalind: Tool-First Biomedical LLM Agent...

Bioinformatics
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librarian
9 views
vartracker: an end-to-end tool for pathogen longitudinal variant analysis and visualisation

vartracker: an end-to-end tool for pathogen lo...

Bioinformatics
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librarian
8 views
BART-spatial unravels biologically significant transcriptional regulators from spatial omics data

BART-spatial unravels biologically significant...

Bioinformatics
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librarian
10 views
RAPID: an interactive R/Shiny platform for end-to-end 16S rRNA and ITS amplicon sequence analysis using DADA2

RAPID: an interactive R/Shiny platform for end...

Bioinformatics
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librarian
11 views
TopoFuseNet: Hierarchical Graph Representation Learning with Multi-Scale Topological Features for Accurate Drug Synergy Prediction

TopoFuseNet: Hierarchical Graph Representation...

Bioinformatics
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librarian
9 views
Efficient Stochastic Trace Generation for Transcription

Efficient Stochastic Trace Generation for Tran...

Bioinformatics
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Arman Ferdowsi
12 views
Allosteric Protein Chemical Shift Perturbations are Ubiquitous

Allosteric Protein Chemical Shift Perturbation...

Bioinformatics
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librarian
9 views
Denoised MDS-UPDRS Part-III Scores Yield New Patterns of Progression Heterogeneity in Early Stage Parkinson's Disease

Denoised MDS-UPDRS Part-III Scores Yield New P...

Bioinformatics
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Jonathan Koss
11 views
QuadStack: Specialized convolutional blocks enable in vivo BG4-binding motif prediction and highlight discrepancies with in vitro G-quadruplexes.

QuadStack: Specialized convolutional blocks en...

Bioinformatics
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librarian
11 views
PHYFUM: Phylogenetic Reconstruction of Normal and Pre-malignant Tissue Evolution Using Fluctuating Methylation

PHYFUM: Phylogenetic Reconstruction of Normal ...

Bioinformatics
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librarian
14 views
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