Bioinformatics

Identification and Mitigation of microbial contaminant reads from long-read metagenomic samples

Identification and Mitigation of microbial con...

Bioinformatics
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librarian
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Bayesian phylodynamic inference of multi-type population trajectories using genomic dat

Bayesian phylodynamic inference of multi-type ...

Bioinformatics
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librarian
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Correcting errors in PCR-derived libraries for rare allele detection by reconstructing parental and daughter strand information

Correcting errors in PCR-derived libraries for...

Bioinformatics
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Duhee Bang
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HyperMPNN - A general strategy to design thermostable proteins learned from hyperthermophiles

HyperMPNN - A general strategy to design therm...

Bioinformatics
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librarian
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MultiPopPred: A Trans-Ethnic Disease Risk Prediction Method, and its Application to the South Asian Population

MultiPopPred: A Trans-Ethnic Disease Risk Pred...

Bioinformatics
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librarian
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A Large-Scale Foundation Model for RNA Function and Structure Prediction

A Large-Scale Foundation Model for RNA Functio...

Bioinformatics
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Le Song
3 views
Identification of neuronatin as a SERCA2b regulin-like protein and assessment of its aggregation propensity via coarse grained simulations.

Identification of neuronatin as a SERCA2b regu...

Bioinformatics
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Ivano Eberini
3 views
Decoding substrate specificity determining factors in glycosyltransferase-B enzymes - Insights from machine learning models

Decoding substrate specificity determining fac...

Bioinformatics
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librarian
3 views
A Machine Learning Model of Perturb-Seq Data for Use in Space Flight Gene Expression Profile Analysis

A Machine Learning Model of Perturb-Seq Data f...

Bioinformatics
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librarian
4 views
FIDDLE: a deep learning method for chemical formulas prediction from tandem mass spectra

FIDDLE: a deep learning method for chemical fo...

Bioinformatics
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librarian
3 views
Accelerating whole-genome alignment in the age of complete genome assemblies

Accelerating whole-genome alignment in the age...

Bioinformatics
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librarian
3 views
CASTER-DTA: Equivariant Graph Neural Networks for Predicting Drug-Target Affinity

CASTER-DTA: Equivariant Graph Neural Networks ...

Bioinformatics
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librarian
5 views
Language Models for Molecular Dynamics

Language Models for Molecular Dynamics

Bioinformatics
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librarian
3 views
Brisk: Exact resource-efficient dictionary for k-mers

Brisk: Exact resource-efficient dictionary for...

Bioinformatics
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librarian
5 views
EasyPubPlot: a shiny web application for rapid omics data exploration and visualization

EasyPubPlot: a shiny web application for rapid...

Bioinformatics
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librarian
3 views
NoButter: An R package for reducing transcript dis-persion in CosMx Spatial Molecular Imaging Data

NoButter: An R package for reducing transcript...

Bioinformatics
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librarian
3 views
Stage-Specific Transcriptome Landscape of Hepatocellular Carcinoma: Insights from Super and Poor Survivors with Prognostic Signature Identification

Stage-Specific Transcriptome Landscape of Hepa...

Bioinformatics
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librarian
4 views
SNMF: Integrated Learning of Mutational Signatures and Prediction of DNA Repair Deficiencies

SNMF: Integrated Learning of Mutational Signat...

Bioinformatics
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librarian
3 views
Aggregating gut: on the link between neurodegeneration and bacterial functional amyloids

Aggregating gut: on the link between neurodege...

Bioinformatics
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librarian
3 views
Association between COVID-19 Disease Severity and T Cell Receptor Repertoire

Association between COVID-19 Disease Severity ...

Bioinformatics
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librarian
5 views
De novo assembled databases enable species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition

De novo assembled databases enable species-spe...

Bioinformatics
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librarian
3 views
Deep Learning Unravels Potential Antibiotic-Resistance Drugs against Klebsiella Pneumoniae

Deep Learning Unravels Potential Antibiotic-Re...

Bioinformatics
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Glen Qin
2 views
VaxLLM: Leveraging Fine-tuned Large Language Model for automated annotation of Brucella Vaccines

VaxLLM: Leveraging Fine-tuned Large Language M...

Bioinformatics
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librarian
1 view
In silico target discovery for aromatic amino acid production in Escherichia coli

In silico target discovery for aromatic amino ...

Bioinformatics
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André Fonseca
1 view
Leveraging the Human Panproteome to Enhance Peptide and Protein Identification in Proteomics and Metaproteomics

Leveraging the Human Panproteome to Enhance Pe...

Bioinformatics
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librarian
1 view
OrthologAL: A Shiny application for quality-aware humanization of non-human pre-clinical high-dimensional gene expression data

OrthologAL: A Shiny application for quality-aw...

Bioinformatics
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librarian
1 view
iSIM-sigma: efficient standard deviation calculation for molecular similarity

iSIM-sigma: efficient standard deviation calcu...

Bioinformatics
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librarian
1 view
Exploiting uniqueness: seed-chain-extend alignment on elastic founder graphs

Exploiting uniqueness: seed-chain-extend align...

Bioinformatics
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librarian
2 views
DyNDG: Identifying Leukemia-Related Genes based on the Time-Series Dynamical Network by Integrating Differential Genes

DyNDG: Identifying Leukemia-Related Genes base...

Bioinformatics
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librarian
2 views
SPACE: STRING proteins as complementary embeddings

SPACE: STRING proteins as complementary embeddings

Bioinformatics
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librarian
2 views
DockFormer: Efficient Multi-Modal Receptor-Ligand Interaction Prediction using Pair Transformer

DockFormer: Efficient Multi-Modal Receptor-Lig...

Bioinformatics
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librarian
2 views
The effectiveness of Large Language Models with RAG for auto-annotating phenotype descriptions

The effectiveness of Large Language Models wit...

Bioinformatics
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librarian
5 views
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